>> COLAB@CUHK-SZ

Decoding the language of life
through computation.

We build computational and machine-learning models to decode genome regulation, cellular state, and disease mechanisms — turning high-dimensional biological data into testable hypotheses for human health.

24 Publications
7 Software
2026 Lab founded

Recent news

Selected updates from the lab.

2026-09

Zhijian accepts an offer to join the School of Medicine, CUHK-Shenzhen, as Assistant Professor.

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About the PI

Principal Investigator at the School of Medicine, CUHK-Shenzhen.

Photo of Zhijian Li

Zhijian Li, Ph.D., is a Principal Investigator at the School of Medicine, The Chinese University of Hong Kong, Shenzhen. His research focuses on computational biology, genomics, and machine learning, with particular interests in genome regulation, single-cell multi-omics, and computational modeling of cellular systems.

Before joining CUHK-Shenzhen, he conducted postdoctoral research at the Broad Institute of MIT and Harvard. He received his Ph.D. from RWTH Aachen University, where he trained in computational genomics and developed methods for analyzing high-dimensional genomic data.

Position
Principal Investigator, Assistant Professor
Affiliation
School of Medicine, CUHK-Shenzhen
Email
lizhijian [at] cuhk.edu.cn
Office
School of Medicine, 2001 Longxiang Blvd, Longgang, Shenzhen

Research highlights

Three programs connecting genome regulation, cell state, and predictive biology.

α

Regulatory genomics

Decoding how DNA sequence and chromatin encode gene regulation and non-coding function.

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Selected publications

Representative papers — full list on the publications page.

  1. Kidney spatial multiomics mapping decodes scleroderma renal crisis

    Zhijian Li#, Chuanfen Li#, Leting Zheng#, Fang Qin, Junyang Wu, Qiuyan Zhou, Jiale Wen, Hanyou Mo*, Shaojun Liu*, Minrui Liang*

    Annals of the Rheumatic Diseases 17, 3975 (2026).

  2. Systematic benchmarking of computational methods to identify spatially variable genes

    Zhijian Li#, Zain M.Patel#, Dongyuan Song, Sai Nirmayi Yasa, Robrecht Cannoodt, Guanao Yan, Jingyi Jessica Li, Luca Pinello.

    Genome Biology 26, 285 (2025).

  3. Spatial multiomics decipher fibroblast–macrophage dynamics in systemic sclerosis

    Zhijian Li, Aleix Rius Rigau, Wenjie Xie, Linlin Huang, Wenjing Ye, Yi-Nan Li, Alexandru-Emil Matei, Christina Bergmann, Xiaohang Shao, Hejian Zou, Jiucun Wang, Luca Pinello, Jörg H W Distler, Rui He, Minrui Liang

    Annals of the Rheumatic Diseases 84, 1231-1245 (2025).

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We are looking for curious people.

Postdocs, PhD students, research assistants and visiting scholars with backgrounds in computational biology, statistics, machine learning, or molecular biology — we'd love to hear from you.

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